IL_9Q1S_132

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_132 not in the Motif Atlas

Homologous match to IL_9PN5_101

Geometric discrepancy: 0.1966

The information below is about IL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9Q1S|1|5|C|4412
9Q1S|1|5|C|4413
9Q1S|1|5|A|4414
9Q1S|1|5|A|4415
9Q1S|1|5|G|4416
*
9Q1S|1|5|C|4426
9Q1S|1|5|G|4427
9Q1S|1|5|A|4428
9Q1S|1|5|C|4429
9Q1S|1|5|G|4430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10

Chain m

Large ribosomal subunit protein eL40