IL_9Q1S_141

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCCAU*AGGCGGA

Length

13 nucleotides

Bulged bases

9Q1S|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|U|4580
9Q1S|1|5|G|4581
9Q1S|1|5|C|4582
9Q1S|1|5|C|4583
9Q1S|1|5|A|4584
9Q1S|1|5|U|4585
*
9Q1S|1|5|A|4717
9Q1S|1|5|G|4718
9Q1S|1|5|G|4719
9Q1S|1|5|C|4720
9Q1S|1|5|G|4721
9Q1S|1|5|G|4722
9Q1S|1|5|A|4723

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13