IL_9Q1S_163

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9Q1S|1|7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_163 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.1641

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Q1S|1|7|C|15
9Q1S|1|7|A|16
*
9Q1S|1|7|U|62
9Q1S|1|7|C|63
9Q1S|1|7|G|64

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10

Chain J

60S ribosomal protein L11