IL_9Q1S_182

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

9Q1S|1|9|C|142, 9Q1S|1|9|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|G|130
9Q1S|1|9|A|141
9Q1S|1|9|C|142
9Q1S|1|9|U|143
9Q1S|1|9|U|144
*
9Q1S|1|9|A|175
9Q1S|1|9|U|176
9Q1S|1|9|G|177
9Q1S|1|9|C|178
9Q1S|1|9|C|179
9Q1S|1|9|G|180
9Q1S|1|9|A|181
9Q1S|1|9|C|182

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

Small ribosomal subunit protein eS6