IL_9Q1S_192
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 9Q1S|1|9|U|428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_192 not in the Motif Atlas
- Homologous match to IL_9H3G_175
- Geometric discrepancy: 0.3576
- The information below is about IL_9H3G_175
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93336.4
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9Q1S|1|9|G|411
9Q1S|1|9|G|412
9Q1S|1|9|G|413
*
9Q1S|1|9|C|424
9Q1S|1|9|G|425
9Q1S|1|9|A|426
9Q1S|1|9|U|427
9Q1S|1|9|U|428
9Q1S|1|9|C|429
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain JJ
- Small ribosomal subunit protein uS4
- Chain XX
- 40S ribosomal protein S23
Coloring options: