IL_9Q1S_193

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_193 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.2961

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9Q1S|1|9|G|437
9Q1S|1|9|G|438
9Q1S|1|9|A|439
*
9Q1S|1|9|U|454
9Q1S|1|9|A|455
9Q1S|1|9|C|456

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

Small ribosomal subunit protein eS6

Chain II

40S ribosomal protein S8