IL_9Q1S_202

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9Q1S|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|A|599
9Q1S|1|9|G|600
9Q1S|1|9|G|601
9Q1S|1|9|G|602
9Q1S|1|9|C|603
9Q1S|1|9|A|604
9Q1S|1|9|A|605
9Q1S|1|9|G|606
9Q1S|1|9|U|607
9Q1S|1|9|C|608
*
9Q1S|1|9|G|635
9Q1S|1|9|C|636
9Q1S|1|9|U|637

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain DD

Small ribosomal subunit protein uS3

Chain JJ

Small ribosomal subunit protein uS4

Chain ee

Small ribosomal subunit protein eS30