IL_9Q1S_212

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|G|807
9Q1S|1|9|A|808
9Q1S|1|9|A|809
9Q1S|1|9|A|810
9Q1S|1|9|A|811
9Q1S|1|9|A|812
9Q1S|1|9|A|813
9Q1S|1|9|U|814
9Q1S|1|9|U|815
*
9Q1S|1|9|A|849
9Q1S|1|9|C|850
9Q1S|1|9|C|851
9Q1S|1|9|G|852
9Q1S|1|9|C|853
9Q1S|1|9|A|854
9Q1S|1|9|G|855
9Q1S|1|9|C|856

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

Small ribosomal subunit protein uS4

Chain LL

Small ribosomal subunit protein uS17

Chain WW

40S ribosomal protein S15a