IL_9Q1S_246
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 9Q1S|1|9|U|1585, 9Q1S|1|9|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|9|G|1541
9Q1S|1|9|C|1542
9Q1S|1|9|U|1543
9Q1S|1|9|C|1544
9Q1S|1|9|A|1545
9Q1S|1|9|G|1546
9Q1S|1|9|C|1547
9Q1S|1|9|G|1548
9Q1S|1|9|U|1549
9Q1S|1|9|G|1550
*
9Q1S|1|9|C|1582
9Q1S|1|9|C|1583
9Q1S|1|9|G|1584
9Q1S|1|9|U|1585
9Q1S|1|9|U|1586
9Q1S|1|9|G|1587
9Q1S|1|9|A|1588
9Q1S|1|9|A|1589
9Q1S|1|9|C|1590
9Q1S|1|9|C|1591
9Q1S|1|9|C|1592
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS3
- Chain FF
- Small ribosomal subunit protein uS7
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain TT
- Small ribosomal subunit protein eS19
- Chain UU
- uS10
- Chain ZZ
- 40S ribosomal protein S25
- Chain dd
- 40S ribosomal protein S29
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