IL_9Q2M_030

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9Q2M|1|5|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_030 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.3067

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9Q2M|1|5|G|497
9Q2M|1|5|C|498
9Q2M|1|5|G|499
*
9Q2M|1|5|C|656
9Q2M|1|5|C|657

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4