IL_9Q2M_133

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_133 not in the Motif Atlas

Homologous match to IL_9PN5_098

Geometric discrepancy: 0.2082

The information below is about IL_9PN5_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10004.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9Q2M|1|5|G|4400
9Q2M|1|5|G|4401
9Q2M|1|5|C|4402
9Q2M|1|5|U|4403
*
9Q2M|1|5|G|4440
9Q2M|1|5|A|4441
9Q2M|1|5|U|4442
9Q2M|1|5|C|4443
9Q2M|1|5|C|4444

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain b

eL29