IL_9Q2M_139

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9Q2M|1|5|A|4518, 9Q2M|1|5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_139 not in the Motif Atlas

Homologous match to IL_9AXU_100

Geometric discrepancy: 0.1293

The information below is about IL_9AXU_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9Q2M|1|5|C|4458
9Q2M|1|5|U|4459
*
9Q2M|1|5|A|4517
9Q2M|1|5|A|4518
9Q2M|1|5|C|4519
9Q2M|1|5|G|4520

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Large ribosomal subunit protein uL14