IL_9Q2M_165

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

9Q2M|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_165 not in the Motif Atlas

Homologous match to IL_8GLP_178

Geometric discrepancy: 0.1328

The information below is about IL_8GLP_178

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9Q2M|1|5|G|5012
9Q2M|1|5|C|5013
9Q2M|1|5|A|5014
*
9Q2M|1|5|U|5035
9Q2M|1|5|C|5036

Current chains

Chain 5

28S rRNA

Nearby chains