IL_9Q2M_199

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

9Q2M|1|9|G|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_199 not in the Motif Atlas

Homologous match to IL_9PN5_166

Geometric discrepancy: 0.1783

The information below is about IL_9PN5_166

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9Q2M|1|9|U|419
9Q2M|1|9|C|420
*
9Q2M|1|9|G|430
9Q2M|1|9|G|431
9Q2M|1|9|A|432

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24