IL_9Q2M_259

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9Q2M|1|9|C|1559, 9Q2M|1|9|A|1586, 9Q2M|1|9|C|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|G|1556
9Q2M|1|9|U|1557
9Q2M|1|9|G|1558
9Q2M|1|9|C|1559
9Q2M|1|9|C|1560
9Q2M|1|9|U|1561
9Q2M|1|9|A|1562
9Q2M|1|9|C|1563
9Q2M|1|9|C|1564
*
9Q2M|1|9|G|1583
9Q2M|1|9|U|1584
9Q2M|1|9|A|1585
9Q2M|1|9|A|1586
9Q2M|1|9|C|1587
9Q2M|1|9|C|1588

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain KK

40S ribosomal protein S10

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29