IL_9Q2O_062
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9Q2O|1|5|A|1650, 9Q2O|1|5|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2O_062 not in the Motif Atlas
- Homologous match to IL_8GLP_290
- Geometric discrepancy: 0.1427
- The information below is about IL_8GLP_290
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Q2O|1|5|G|1522
9Q2O|1|5|A|1523
9Q2O|1|5|A|1524
9Q2O|1|5|A|1525
9Q2O|1|5|G|1526
*
9Q2O|1|5|C|1648
9Q2O|1|5|U|1649
9Q2O|1|5|A|1650
9Q2O|1|5|G|1651
9Q2O|1|5|U|1652
9Q2O|1|5|A|1653
9Q2O|1|5|G|1654
9Q2O|1|5|C|1655
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- 60S ribosomal protein L37
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