IL_9Q2O_130

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9Q2O|1|5|G|4084, 9Q2O|1|5|G|4086, 9Q2O|1|5|G|4087, 9Q2O|1|5|C|4162, 9Q2O|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|G|4082
9Q2O|1|5|U|4083
9Q2O|1|5|G|4084
9Q2O|1|5|A|4085
9Q2O|1|5|G|4086
9Q2O|1|5|G|4087
9Q2O|1|5|C|4088
*
9Q2O|1|5|G|4161
9Q2O|1|5|C|4162
9Q2O|1|5|U|4163
9Q2O|1|5|C|4164

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

60S ribosomal protein L8

Chain G

Large ribosomal subunit protein eL8

Chain X

Large ribosomal subunit protein uL23