IL_9Q2O_142

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9Q2O|1|5|A|4518, 9Q2O|1|5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_142 not in the Motif Atlas

Homologous match to IL_8GLP_148

Geometric discrepancy: 0.118

The information below is about IL_8GLP_148

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9Q2O|1|5|C|4458
9Q2O|1|5|U|4459
*
9Q2O|1|5|A|4517
9Q2O|1|5|A|4518
9Q2O|1|5|C|4519
9Q2O|1|5|G|4520

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain B

60S ribosomal protein L3

Chain V

Large ribosomal subunit protein uL14