IL_9Q2O_156

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGAGCC*GGAACCUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|4739
9Q2O|1|5|G|4740
9Q2O|1|5|G|4743
9Q2O|1|5|A|4744
9Q2O|1|5|G|4745
9Q2O|1|5|C|4746
9Q2O|1|5|C|4747
*
9Q2O|1|5|G|4953
9Q2O|1|5|G|4954
9Q2O|1|5|A|4955
9Q2O|1|5|A|4956
9Q2O|1|5|C|4957
9Q2O|1|5|C|4958
9Q2O|1|5|U|4959
9Q2O|1|5|G|4960

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain f

Large ribosomal subunit protein eL33