IL_9Q2O_206
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UCCA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2O_206 not in the Motif Atlas
- Geometric match to IL_5UNE_005
- Geometric discrepancy: 0.3142
- The information below is about IL_5UNE_005
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_76776.4
- Basepair signature
- cWW-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q2O|1|9|U|566
9Q2O|1|9|C|567
9Q2O|1|9|C|568
9Q2O|1|9|A|569
*
9Q2O|1|9|U|581
9Q2O|1|9|U|582
9Q2O|1|9|A|583
9Q2O|1|9|A|584
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain YY
- 40S ribosomal protein S24
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