IL_9Q2O_244
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9Q2O|1|9|C|1331, 9Q2O|1|9|U|1494, 9Q2O|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2O|1|9|U|1329
9Q2O|1|9|G|1330
9Q2O|1|9|C|1331
9Q2O|1|9|A|1332
9Q2O|1|9|U|1333
9Q2O|1|9|G|1334
9Q2O|1|9|G|1335
*
9Q2O|1|9|U|1492
9Q2O|1|9|C|1493
9Q2O|1|9|U|1494
9Q2O|1|9|G|1495
9Q2O|1|9|U|1496
9Q2O|1|9|G|1497
9Q2O|1|9|A|1498
9Q2O|1|9|U|1499
9Q2O|1|9|G|1500
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain AT
- Transfer RNA; tRNA
- Chain DD
- 40S ribosomal protein S3
- Chain KK
- 40S ribosomal protein S10
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- 40S ribosomal protein S29
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