IL_9Q2O_254

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9Q2O|1|9|C|1553, 9Q2O|1|9|A|1580, 9Q2O|1|9|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|G|1550
9Q2O|1|9|U|1551
9Q2O|1|9|G|1552
9Q2O|1|9|C|1553
9Q2O|1|9|C|1554
9Q2O|1|9|U|1555
9Q2O|1|9|A|1556
9Q2O|1|9|C|1557
9Q2O|1|9|C|1558
*
9Q2O|1|9|G|1577
9Q2O|1|9|U|1578
9Q2O|1|9|A|1579
9Q2O|1|9|A|1580
9Q2O|1|9|C|1581
9Q2O|1|9|C|1582

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain KK

40S ribosomal protein S10

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29