IL_9Q2O_264
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUA*UUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2O_264 not in the Motif Atlas
- Homologous match to IL_9PN5_227
- Geometric discrepancy: 0.2486
- The information below is about IL_9PN5_227
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55553.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q2O|1|9|U|1729
9Q2O|1|9|U|1730
9Q2O|1|9|A|1731
*
9Q2O|1|9|U|1803
9Q2O|1|9|U|1804
9Q2O|1|9|G|1805
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain II
- 40S ribosomal protein S8
- Chain V
- Large ribosomal subunit protein uL14
Coloring options: