IL_9Q2P_024

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9Q2P|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_024 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2947

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Q2P|1|5|C|459
9Q2P|1|5|C|460
*
9Q2P|1|5|G|695
9Q2P|1|5|C|696
9Q2P|1|5|G|697

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

60S ribosomal protein L28