IL_9Q2P_035

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCC*GUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_035 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3503

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9Q2P|1|5|C|521
9Q2P|1|5|C|522
9Q2P|1|5|C|523
*
9Q2P|1|5|G|638
9Q2P|1|5|U|639
9Q2P|1|5|C|640
9Q2P|1|5|G|641

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13