IL_9Q2P_152

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_152 not in the Motif Atlas

Homologous match to IL_8GLP_162

Geometric discrepancy: 0.1368

The information below is about IL_8GLP_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9Q2P|1|5|U|4638
9Q2P|1|5|G|4639
9Q2P|1|5|C|4640
*
9Q2P|1|5|G|4659
9Q2P|1|5|G|4660
9Q2P|1|5|G|4661

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

uL24

Chain d

60S ribosomal protein L31