IL_9Q2P_157

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

9Q2P|1|5|C|4772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_157 not in the Motif Atlas

Geometric match to IL_7DLZ_006

Geometric discrepancy: 0.3857

The information below is about IL_7DLZ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9Q2P|1|5|G|4769
9Q2P|1|5|U|4770
9Q2P|1|5|C|4771
9Q2P|1|5|C|4772
9Q2P|1|5|C|4773
*
9Q2P|1|5|G|4862
9Q2P|1|5|G|4863
9Q2P|1|5|U|4864
9Q2P|1|5|C|4865

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13