IL_9Q2P_166
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2P_166 not in the Motif Atlas
- Geometric match to IL_8OI5_132
- Geometric discrepancy: 0.1902
- The information below is about IL_8OI5_132
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9Q2P|1|5|A|5014
9Q2P|1|5|G|5015
9Q2P|1|5|A|5016
9Q2P|1|5|G|5017
*
9Q2P|1|5|C|5032
9Q2P|1|5|G|5033
9Q2P|1|5|A|5034
9Q2P|1|5|U|5035
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain II
- 40S ribosomal protein S8
- Chain R
- 60S ribosomal protein L19
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