IL_9Q2P_198

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

9Q2P|1|9|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_198 not in the Motif Atlas

Homologous match to IL_9PN5_164

Geometric discrepancy: 0.2263

The information below is about IL_9PN5_164

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Q2P|1|9|U|487
9Q2P|1|9|U|488
9Q2P|1|9|A|489
*
9Q2P|1|9|U|511
9Q2P|1|9|A|512

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain EF

Elongation factor 1-alpha 1

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24