IL_9Q2P_216

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_216 not in the Motif Atlas

Geometric match to IL_6M6R_001

Geometric discrepancy: 0.2152

The information below is about IL_6M6R_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Q2P|1|9|G|874
9Q2P|1|9|A|875
9Q2P|1|9|C|876
*
9Q2P|1|9|G|910
9Q2P|1|9|C|911
9Q2P|1|9|C|912

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS7

Chain LL

Small ribosomal subunit protein uS17

Chain R

60S ribosomal protein L19