IL_9Q2P_228
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2P_228 not in the Motif Atlas
- Geometric match to IL_8GLP_245
- Geometric discrepancy: 0.2202
- The information below is about IL_8GLP_245
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.4
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 62
Unit IDs
9Q2P|1|9|U|1101
9Q2P|1|9|G|1102
9Q2P|1|9|C|1103
*
9Q2P|1|9|G|1129
9Q2P|1|9|G|1130
9Q2P|1|9|G|1131
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- 40S ribosomal protein S13
- Chain RR
- 40S ribosomal protein S17
- Chain aa
- eS26
- Chain bb
- 40S ribosomal protein S27
Coloring options: