IL_9Q2P_251

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_251 not in the Motif Atlas

Geometric match to IL_5MWI_003

Geometric discrepancy: 0.094

The information below is about IL_5MWI_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Q2P|1|9|A|1537
9Q2P|1|9|C|1538
9Q2P|1|9|U|1539
*
9Q2P|1|9|A|1594
9Q2P|1|9|U|1595
9Q2P|1|9|U|1596

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain TT

Small ribosomal subunit protein eS19

Chain ZZ

40S ribosomal protein S25