IL_9Q2P_256

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9Q2P|1|9|C|1701, 9Q2P|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_256 not in the Motif Atlas

Homologous match to IL_9H3G_233

Geometric discrepancy: 0.1737

The information below is about IL_9H3G_233

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9Q2P|1|9|C|1700
9Q2P|1|9|C|1701
9Q2P|1|9|G|1702
*
9Q2P|1|9|C|1833
9Q2P|1|9|A|1834
9Q2P|1|9|A|1835
9Q2P|1|9|G|1836

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 1

NediV ORF

Chain 2

Transfer RNA; tRNA

Chain aa

eS26