IL_9Q2T_009
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGAAUUU*AUUAGUCA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_009 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1671
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.6
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9Q2T|1|5|U|31
9Q2T|1|5|G|32
9Q2T|1|5|A|33
9Q2T|1|5|A|34
9Q2T|1|5|U|35
9Q2T|1|5|U|36
9Q2T|1|5|U|37
*
9Q2T|1|5|A|44
9Q2T|1|5|U|45
9Q2T|1|5|U|46
9Q2T|1|5|A|47
9Q2T|1|5|G|48
9Q2T|1|5|U|49
9Q2T|1|5|C|50
9Q2T|1|5|A|51
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- 60S ribosomal protein L37
- Chain o
- eL42
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