IL_9Q2T_015

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCUCC*GCCCG

Length

11 nucleotides

Bulged bases

9Q2T|1|5|U|171, 9Q2T|1|5|C|265, 9Q2T|1|5|C|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|C|168
9Q2T|1|5|G|169
9Q2T|1|5|C|170
9Q2T|1|5|U|171
9Q2T|1|5|C|172
9Q2T|1|5|C|173
*
9Q2T|1|5|G|263
9Q2T|1|5|C|264
9Q2T|1|5|C|265
9Q2T|1|5|C|266
9Q2T|1|5|G|267

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain h

60S ribosomal protein L35