IL_9Q2T_027

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9Q2T|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_027 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2854

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9Q2T|1|5|C|459
9Q2T|1|5|C|460
*
9Q2T|1|5|G|695
9Q2T|1|5|C|696
9Q2T|1|5|G|697

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein eL6

Chain r

60S ribosomal protein L28