IL_9Q2T_039

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9Q2T|1|5|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_039 not in the Motif Atlas

Homologous match to IL_8GLP_034

Geometric discrepancy: 0.1974

The information below is about IL_8GLP_034

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9Q2T|1|5|C|709
9Q2T|1|5|G|710
*
9Q2T|1|5|C|1286
9Q2T|1|5|G|1287
9Q2T|1|5|G|1288

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein eL6

Chain f

Large ribosomal subunit protein eL33