IL_9Q2T_062
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_062 not in the Motif Atlas
- Homologous match to IL_8GLP_059
- Geometric discrepancy: 0.1989
- The information below is about IL_8GLP_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9Q2T|1|5|C|1551
9Q2T|1|5|G|1552
9Q2T|1|5|A|1553
9Q2T|1|5|A|1554
9Q2T|1|5|G|1555
*
9Q2T|1|5|U|1572
9Q2T|1|5|G|1573
9Q2T|1|5|G|1574
9Q2T|1|5|A|1575
9Q2T|1|5|G|1576
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- 60S ribosomal protein L37a
Coloring options: