IL_9Q2T_098

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

9Q2T|1|5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_098 not in the Motif Atlas

Homologous match to IL_8GLP_095

Geometric discrepancy: 0.1132

The information below is about IL_8GLP_095

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9Q2T|1|5|G|2549
9Q2T|1|5|G|2550
*
9Q2T|1|5|C|2768
9Q2T|1|5|U|2769
9Q2T|1|5|C|2770

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L34