IL_9Q2T_121

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_121 not in the Motif Atlas

Geometric match to IL_8GLP_012

Geometric discrepancy: 0.2805

The information below is about IL_8GLP_012

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9Q2T|1|5|G|3722
9Q2T|1|5|A|3723
*
9Q2T|1|5|U|3729
9Q2T|1|5|U|3730
9Q2T|1|5|C|3731

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

eL42