IL_9Q2T_123
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9Q2T|1|5|A|3785, 9Q2T|1|5|C|3791, 9Q2T|1|5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_123 not in the Motif Atlas
- Homologous match to IL_8GLP_307
- Geometric discrepancy: 0.3923
- The information below is about IL_8GLP_307
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.4
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9Q2T|1|5|C|3781
9Q2T|1|5|C|3782
9Q2T|1|5|A|3783
9Q2T|1|5|A|3784
9Q2T|1|5|A|3785
9Q2T|1|5|U|3786
9Q2T|1|5|G|3787
9Q2T|1|5|C|3788
9Q2T|1|5|C|3789
9Q2T|1|5|U|3790
9Q2T|1|5|C|3791
9Q2T|1|5|G|3792
*
9Q2T|1|5|C|3808
9Q2T|1|5|G|3809
9Q2T|1|5|C|3810
9Q2T|1|5|G|3811
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
Coloring options: