IL_9Q2T_135
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_135 not in the Motif Atlas
- Homologous match to IL_9AXU_094
- Geometric discrepancy: 0.1516
- The information below is about IL_9AXU_094
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9Q2T|1|5|U|4295
9Q2T|1|5|U|4296
9Q2T|1|5|G|4297
9Q2T|1|5|A|4298
*
9Q2T|1|5|U|4312
9Q2T|1|5|A|4313
9Q2T|1|5|C|4314
9Q2T|1|5|A|4315
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain Q
- Large ribosomal subunit protein eL18
- Chain T
- 60S ribosomal protein L21
- Chain b
- Large ribosomal subunit protein eL29
- Chain o
- eL42
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