IL_9Q2T_210

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9Q2T|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|A|599
9Q2T|1|9|G|600
9Q2T|1|9|G|601
9Q2T|1|9|G|602
9Q2T|1|9|C|603
9Q2T|1|9|A|604
9Q2T|1|9|A|605
9Q2T|1|9|G|606
9Q2T|1|9|U|607
9Q2T|1|9|C|608
*
9Q2T|1|9|G|635
9Q2T|1|9|C|636
9Q2T|1|9|U|637

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain JJ

40S ribosomal protein S9

Chain ee

Small ribosomal subunit protein eS30