IL_9Q2T_223

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_223 not in the Motif Atlas

Homologous match to IL_9H3G_195

Geometric discrepancy: 0.5487

The information below is about IL_9H3G_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|C|877
9Q2T|1|9|G|878
9Q2T|1|9|C|879
*
9Q2T|1|9|G|907
9Q2T|1|9|A|908
9Q2T|1|9|G|909

Current chains

Chain 9

18S rRNA

Nearby chains

Chain R

60S ribosomal protein L19