IL_9Q2T_235

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_235 not in the Motif Atlas

Homologous match to IL_9H3G_209

Geometric discrepancy: 0.1232

The information below is about IL_9H3G_209

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9Q2T|1|9|G|1168
9Q2T|1|9|G|1169
9Q2T|1|9|A|1170
9Q2T|1|9|G|1171
9Q2T|1|9|U|1172
9Q2T|1|9|A|1173
9Q2T|1|9|U|1174
9Q2T|1|9|G|1175
*
9Q2T|1|9|U|1186
9Q2T|1|9|G|1187
9Q2T|1|9|A|1188
9Q2T|1|9|A|1189
9Q2T|1|9|A|1190
9Q2T|1|9|C|1191

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

40S ribosomal protein S23

Chain n

eL41