IL_9Q2T_236

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACGGA*UUGUAC

Length

12 nucleotides

Bulged bases

9Q2T|1|9|G|1207, 9Q2T|1|9|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|G|1203
9Q2T|1|9|A|1204
9Q2T|1|9|C|1205
9Q2T|1|9|G|1206
9Q2T|1|9|G|1207
9Q2T|1|9|A|1208
*
9Q2T|1|9|U|1691
9Q2T|1|9|U|1692
9Q2T|1|9|G|1693
9Q2T|1|9|U|1694
9Q2T|1|9|A|1695
9Q2T|1|9|C|1696

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

NediV IRES

Chain CC

40S ribosomal protein S2

Chain aa

eS26