IL_9Q3Q_012
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_012 not in the Motif Atlas
- Homologous match to IL_8B0X_076
- Geometric discrepancy: 0.06
- The information below is about IL_8B0X_076
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9Q3Q|1|A|G|536
9Q3Q|1|A|G|537
9Q3Q|1|A|A|538
9Q3Q|1|A|G|539
*
9Q3Q|1|A|U|554
9Q3Q|1|A|G|555
9Q3Q|1|A|A|556
9Q3Q|1|A|C|557
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL13
- Chain S
- 50S ribosomal protein L20
Coloring options: