IL_9Q3Q_049

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_049 not in the Motif Atlas

Homologous match to IL_8B0X_112

Geometric discrepancy: 0.0349

The information below is about IL_8B0X_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9Q3Q|1|A|C|1357
9Q3Q|1|A|G|1358
9Q3Q|1|A|A|1359
9Q3Q|1|A|G|1360
9Q3Q|1|A|G|1361
*
9Q3Q|1|A|C|1370
9Q3Q|1|A|G|1371
9Q3Q|1|A|U|1372
9Q3Q|1|A|A|1373
9Q3Q|1|A|G|1374

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain C

50S ribosomal protein L2

Chain Z

50S ribosomal protein L28