IL_9Q3Q_060

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_060 not in the Motif Atlas

Homologous match to IL_8B0X_123

Geometric discrepancy: 0.0338

The information below is about IL_8B0X_123

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.6

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9Q3Q|1|A|G|1651
9Q3Q|1|A|A|1652
9Q3Q|1|A|G|1653
9Q3Q|1|A|A|1654
9Q3Q|1|A|A|1655
9Q3Q|1|A|C|1656
*
9Q3Q|1|A|G|2004
9Q3Q|1|A|A|2005
9Q3Q|1|A|C|2006

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain P

Large ribosomal subunit protein bL17