IL_9Q3Q_075

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_075 not in the Motif Atlas

Homologous match to IL_8B0X_136

Geometric discrepancy: 0.1329

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9Q3Q|1|A|U|1864
9Q3Q|1|A|U|1865
9Q3Q|1|A|A|1866
9Q3Q|1|A|G|1867
*
9Q3Q|1|A|C|1874
9Q3Q|1|A|G|1875
9Q3Q|1|A|A|1876
9Q3Q|1|A|A|1877
9Q3Q|1|A|G|1878

Current chains

Chain A

23S Ribosomal RNA

Nearby chains